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Visiting Researchers

Prof. Atilla Akdemir

Eczacılık Meslek Bilimleri
The primary focus of Prof. Dr. Akdemir's research is the identification and optimization of innovative lead compounds for drug development. His research integrates molecular modeling and molecular pharmacology techniques. Following the completion of his doctoral studies, he assumed a position as a computational chemist within a pharmaceutical company. In 2011, he joined the Department of Pharmacology at the Faculty of Pharmacy, Bezmialem Vakıf University, as an assistant professor. He developed the pharmacy faculty curriculum and established the "Drug Discovery and Development" graduate progra...
The primary focus of Prof. Dr. Akdemir's research is the identification and optimization of innovative lead compounds for drug development. His research integrates molecular modeling and molecular pharmacology techniques. Following the completion of his doctoral studies, he assumed a position as a computational chemist within a pharmaceutical company. In 2011, he joined the Department of Pharmacology at the Faculty of Pharmacy, Bezmialem Vakıf University, as an assistant professor. He developed the pharmacy faculty curriculum and established the "Drug Discovery and Development" graduate programs and the Computational Drug Design research laboratory. As the Institutional Erasmus Coordinator, he secured the Erasmus and Erasmus+ charters. In 2013, he was appointed as the Vice Dean of the Faculty of Pharmacy. In 2023, he commenced his academic career at the Faculty of Pharmacy, Istinye University, and in July 2023, he was appointed as the Dean of the Faculty of Pharmacy. Prof. Dr. Akdemir has a publication record, with 64 research articles and 5 book chapters, and an H-index of 22.

Articles

  • The Synthesis, Anticancer Activity, Structure-Activity Relationships and Molecular Modelling Studies of Novel Isoindole-1,3(2H)-dione Compounds Containing Different Functional Groups ,2020
  • Thiosemicarbazone-benzene Sulfonamide Derivatives as Human Carbonic Anhydrases Inhibitors: Synthesis, Characterization, and In silico Studies ,2024
  • Synthesis and biological evaluation of new chloro/acetoxy substituted isoindole analogues as new tyrosine kinase inhibitors ,2020
  • Dithiocarbamates and dithiocarbonates containing 6-nitrosaccharin scaffold: Synthesis, antimycobacterial activity and in silico target prediction using ensemble docking-based reverse virtual screening ,2023
  • Development of Thiazolidinones as Fungal Carbonic Anhydrase Inhibitors ,2020
  • Evaluation of new 2-hydroxy-N-(4-oxo-2-substituted phenyl-1,3- thiazolidin-3-yl)-2-phenylacetamide derivatives as potential antimycobacterial agents ,2020
  • Design and synthesis of novel peptidomimetics for cancer immunotherapy ,2020
  • Azole-Based Compounds That Are Active against Candida Biofilm: In Vitro, In Vivo and In Silico Studies ,2022
  • Thiosemicarbazide-Substituted Coumarins as Selective Inhibitors of the Tumor Associated Human Carbonic Anhydrases IX and XII ,2022
  • Use of acetylcholine binding protein in the search for novel alpha7 nicotinic receptor ligands In silico docking pharmacological screening and X ray analysis ,2009
  • Use of Acetylcholine Binding Protein in the Search for Novel α7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X-ray Analysis ,2009
  • Carbonic Anhydrase Inhibitors Targeting Metabolism and Tumor Microenvironment ,2020
  • New azolyl-derivatives as multitargeting agents against breast cancer and fungal infections: synthesis, biological evaluation and docking study ,2021
  • Synthesis of new 1,2,4‐triazole–(thio)semicarbazide hybrid molecules: Their tyrosinase inhibitor activities and molecular docking analysis ,2021
  • In vitro evaluation of estrogenic, antiestrogenic and antitumor effects of amentoflavone ,2021
  • The neutralization effect of montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies ,2022
  • Synthesis, anti‐TB activities, and molecular docking studies of 4‐(1,2,3‐triazoyl)arylmethanone derivatives ,2022
  • Mandelic acid-based spirothiazolidinones targeting M. tuberculosis: Synthesis, in vitro and in silico investigations ,2022
  • New 1H‐indole‐2,3‐dione 3‐thiosemicarbazones with 3‐sulfamoylphenyl moiety as selective carbonic anhydrase inhibitors ,2022
  • New Pyridinium Salt Derivatives of 2-(Hydrazinocarbonyl)-3-phenyl-1H-indole-5- sulfonamide as Selective Inhibitors of Tumour-Related Human Carbonic Anhydrase Isoforms IX and XII ,2022
  • Anti-SARS-CoV-2 and cytotoxic activity of two marine alkaloids from green alga Caulerpa cylindracea Sonder in the Dardanelles. ,2022
  • Anticholinesterase and Antioxidant Activities of Natural Abietane Diterpenoids with Molecular Docking Studies ,2020
  • Synthesis and biological evaluation of new chloro/acetoxy substituted isoindole analogues as new tyrosine kinase inhibitors ,2019
  • Novel Indole-Based Hydrazones as Potent Inhibitors of the alpha-class Carbonic Anhydrase from Pathogenic Bacterium Vibrio cholerae ,2020
  • Indole-Based Hydrazones Containing A Sulfonamide Moiety as Selective Inhibitors of Tumor-Associated Human Carbonic Anhydrase Isoforms IX and XII ,2019
  • Indole-Based Hydrazones Containing A Sulfonamide Moiety as Selective Inhibitors of Tumor-Associated Human Carbonic Anhydrase Isoforms IX and XII ,2019
  • Synthesis of coumarin-sulfonamide derivatives and determination of their cytotoxicity, carbonic anhydrase inhibitory and molecular docking studies ,2019
  • A Class of Sulfonamides with Strong Inhibitory Action against the Carbonic Anhydrase from Trypanosoma cruzi ,2013
  • Inhibition of tumor-associated human carbonic anhydrase isozymes IX and XII by a new class of substituted-phenylacetamido aromatic sulfonamides ,2013
  • Selective inhibition of human carbonic anhydrases by novel amide derivatives of probenecid: Synthesis, biological evaluation and molecular modelling studies ,2014
  • A Class of Sulfonamides with Strong Inhibitory Action against the alpha-Carbonic Anhydrase from Trypanosoma cruzi ,2013
  • Computational investigation of the selectivity of salen and tetrahydrosalen compounds towards the tumor-associated hCA XII isozyme ,2015
  • Computational investigation of the selectivity of salen and tetrahydrosalen compounds towards the tumor associated hCA XII isozyme ,2014
  • Novel 2-indolinones containing a sulfonamide moiety as selective inhibitors of candida beta-carbonic anhydrase enzyme ,2019
  • Novel 2-indolinones containing a sulfonamide moiety as selective inhibitors of candida beta-carbonic anhydrase enzyme ,2019
  • Synthesis of a new series of dithiocarbamates with effective human carbonic anhydrase inhibitory activity and antiglaucoma action ,2015
  • Discovery of novel isatin-based sulfonamides with potent and selective inhibition of the tumor-associated carbonic anhydrase isoforms IX and XII ,2015
  • New amide derivatives of Probenecid as selective inhibitors of carbonic anhydrase IX and XII: Biological evaluation and molecular modelling studies ,2015
  • Exploring new Probenecid-based carbonic anhydrase inhibitors: Synthesis, biological evaluation and docking studies ,2015
  • Anti-Candida activity and cytotoxicity of a large library of new N-substituted-1,3-thiazolidin-4-one derivatives ,2016
  • A Divalent PAMAM-Based Matrix Metalloproteinase/Carbonic Anhydrase Inhibitor for the Treatment of Dry Eye Syndrome ,2016
  • A novel library of saccharin and acesulfame derivatives as potent and selective inhibitors of carbonic anhydrase IX and XII isoforms ,2016
  • Isatin analogs as novel inhibitors of Candida spp. beta-carbonic anhydrase enzymes ,2016
  • Open saccharin-based secondary sulfonamides as potent and selective inhibitors of cancer-related carbonic anhydrase IX and XII isoforms ,2017
  • Five- and Six-Membered Nitrogen-Containing Compounds as Selective Carbonic Anhydrase Activators ,2017
  • Design, synthesis and biological activity of selective hCAs inhibitors based on 2-(benzylsulfinyl)benzoic acid scaffold ,2019
  • Fibrate-based N-acylsulphonamides targeting carbonic anhydrases: synthesis, biochemical evaluation, and docking studies ,2019
  • Target Recognition Molecules and Molecular Modeling Studies ,2017
  • Novel thiazolidinone-containing compounds, without the well-known sulphonamide zinc-binding group acting as human carbonic anhydrase IX inhibitors ,2018
  • A Study On Synthesis, Biological Activities and Molecular Modelling of Some Novel Trisubstituted 1,2,4-Triazole Derivatives ,2018
  • Aromatase Inhibition by 2-methyl indole hydrAzone derivatives evaluated via molecular docking and in vitro activity studies ,2018
  • Computer design synthesis and bioactivity analyses of drugs like fingolimod used in the treatment of multiple sclerosis ,2017
  • Novel sulfonamide-containing 2-indolinones that selectively inhibit tumor-associated alpha carbonic anhydrases ,2017
  • Synthesis and Functional Investigations of Computer Designed Novel Cladribine-Like Compounds for the Treatment of Multiple Sclerosis ,2017
  • A G q 11 coupled mutant histamine H 1 receptor F435A activated solely by synthetic ligands RASSL ,2005
  • Fragment growing induces conformational changes in acetylcholine binding protein a structural and thermodynamic analysis ,2011
  • Acetylcholine binding protein AChBP as template for hierarchical in silico screening procedures to identify structurally novel ligands for the nicotinic receptors ,2011
  • Structure based design synthesis and structure activity relationships of dibenzosuberyl and benzoate substituted tropines as ligands for acetylcholine binding protein ,2012
  • Identification of novel 7 nicotinic receptor ligands by in silico screening against the crystal structure of a chimeric 7 receptor ligand binding domain ,2012
  • The extremo carbonic anhydrase CA from Sulfurihydrogenibium azorense the fastest CA known is highly activated by amino acids and amines ,2013
  • o Benzenedisulfonimido sulfonamides are potent inhibitors of the tumor associated carbonic anhydrase isoforms CA IX and CA XII ,2013
  • Xanthates and Trithiocarbonates Strongly Inhibit Carbonic Anhydrases and Show Antiglaucoma Effects in Vivo ,2013
  • Inhibition of tumor associated human carbonic anhydrase isozymes IX and XII by a new class of substituted phenylacetamido aromatic sulfonamides ,2013
  • Selective inhibition of human carbonic anhydrases by novel amide derivatives of probenecid Synthesis biological evaluation and molecular modelling studies ,2014

Reports

  • Evaluation of anti-inflammatory effect of novel fingolimod based compound F1-12h in SH-SY5Y, SK-N-SH and U-118MG cells for the efficancy in multiple sclerosis - ÇELİK TURGUT GURBET,DOYDUK DOĞUKAN,YILDIRIR YILMAZ,YAVUZ SERKAN,AKDEMİR ATİLLA,DİŞLİ ALİ,ŞEN ALAATTİN
  • Cytotoxic Effect of Novel 1-Ethyl and 2-Methyl Indole Derivatives on Breast Cancer Cells: ER and Aromatase as Their Potential Therapeutic Targets - İNCE ELİF,TAŞCIOĞLU ALİYEV ALEV,AKDEMİR ATİLLA,DURGUN KÜBRA,SÜZEN SİBEL,GÜRER ORHAN HANDE
  • Computer Aided Design and Synthesis of New Ursane Triterpenoids with Nuclear Factor Kappa B Inhibition Effect - ŞENOL HALİL,AKDEMİR ATİLLA,TOPÇU GÜLAÇTI
  • Nükleer Faktör Kappa-B İnhibisyon Etkili Ursan Türevi Triterpenlerin Sentezi - ŞENOL HALİL,TUNCAY SALİH,SEÇEN HASAN,ÖCAL NÜKET,AKDEMİR ATİLLA,TOPÇU GÜLAÇTI
  • Design and discovery of novel melatonin analogues as CYP1B1 inhibitors - İNCE ELİF,KARAASLAN ÇİĞDEM,AKDEMİR ATİLLA,SÜZEN SİBEL,GÜRER ORHAN HANDE
  • Inhibition of Canavalia ensiformis urease with new 1,2,4-triazole compounds - KOLCUOĞLU YAKUP,GÜLTEKİN ERGÜN,BEKİRCAN OLCAY,AKDEMİR ATİLLA
  • Eraslan Elma P., Akdemir A., Göktaş F., Karali N.L., Angeli A. , Kızılırmak M. , et al., ”Synthesis, biological evaluation and docking studies of structurally novel 1H-indole-2,3-dion 3-(N-phenylthiosemicarbazones) as potential hCA IX and XII inhibitors - ERASLAN PINAR,AKDEMİR ATİLLA,GÖKTAŞ FÜSUN,KARALI NİLGÜN LÜTFİYE,Kızılırmak Merih,Supuran Claudiu T
  • Structurally novel thiazolidinone-containing compounds that do not contain sulfonamide groups display antifungal activity - GÜZEL AKDEMİR ÖZLEN,CARREDORİ SİMONE,RİVANERA DANİELA,ÇAPAN GÜLTAZE,AKDEMİR ATİLLA
  • Bazı Uvaol Türevlerinin Sentezi ve in vitro Biyokaitivitelerininİncelenmesi - ŞENOL HALİL,TUNCAY SALİH,GÜLER ERAY METİN,SEÇEN HASAN,ÖCAL SUNGUROĞLU ZEHRA NÜKET,AKDEMİR ATİLLA,KOÇYİĞİT ABDURRAHİM,TOPÇU GÜLAÇTI
  • Design and discovery of novel melatonin analogues as CYP1B1 inhibitors - İNCE ELİF,KARAASLAN ÇİĞDEM,AKDEMİR ATİLLA,SÜZEN SİBEL,GÜRER ORHAN HANDE
  • Molecular modelling studies to guide synthesis programs of new thiourea compounds as putative inhibitors of hCA IX/XII and VcCA - Demir Kübra,GÜZEL AKDEMİR ÖZLEN,KARALI NİLGÜN LÜTFİYE,AKDEMİR ATİLLA
  • Structurally novel thiazolidinone-containing compounds that do not contain sulfonamide groups display antifungal activity - GÜZEL AKDEMİR ÖZLEN,CARRADORİ SİMONE,RİVANERA DANİELA,ÇAPAN GÜLTAZE,AKDEMİR ATİLLA
  • Nükleer Faktör Kappa-B İnhibisyon Etkili Ursan Türevi Triterpenlerin Sent - ŞENOL HALİL,TUNCAY SALİH,SEÇEN HASAN,ÖCAL SUNGUROĞLU ZEHRA NÜKET,AKDEMİR ATİLLA,TOPÇU GÜLAÇTI
  • Molecular modelling studies to guide sythesis programs of new thiourea compounds as putative inhibitors of hCA IX/XII and VcCA - GÜZEL AKDEMİR ÖZLEN,Demir Kübra,KARALI NİLGÜN LÜTFİYE,AKDEMİR ATİLLA
  • Evaluation of Anti-inflammatory Effect of Novel Fingolimod Based Compound F1-12h in SH-SY5Y, SK-N-SH and U-118 MG Cells for the Efficacy in Multiple Sclerosis - ÇELİK TURGUT GURBET,DOYDUK DOĞUKAN,YILDIRIR YILMAZ,YAVUZ SERKAN,AKDEMİR ATİLLA,DİŞLİ ALİ,ŞEN ALAATTİN

Books

  • Flavonoids and Phenolics. Medicinal Chemistry Lessons From Nature – Bentham Science Publisher
  • Medisinal Kimya Giriş – Ankara Nobel Tıp Kitab Evleri
  • Carbonic Anhydrases as Biocatalysts: From Theory to Medical and Industrial Applications – Elsevier Science
  • Pharmacology of nicotinic acetylcholine receptors from the basic and therapeutic perspectives – Research Signpost

Awards

  • Mosaic Research – 2004
Prof. Atilla Akdemir - İstinye Üniversitesi
atilla.akdemiristinye.edu.tr
SW

Research Areas

  • Sağlık Bilimleri Temel Alanı
  • Farmakoloji

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